Table 2 Overview of image and segmentation formats as well as segmentation region of interest (ROI), imaging phase or sequence and annotation type
Dataset name | Original image format | Original segmentation format | Primary ROI(s) | Phase/sequence | Annotation type |
|---|---|---|---|---|---|
LIDC-IDRI | DICOM | DICOM-SEG | Lung nodule | Non-contrast | Manual (4 readers) |
LNDb | MetaImage | MetaImage | Lung nodule | Non-contrast | Manual (1–3 readers) |
NSCLC-Radiogenomics | DICOM | DICOM-SEG | Lung tumor | Non-contrast | Manual |
NSCLC-Radiomics | DICOM | DICOM-SEG | Lung tumor | Non-contrast | Manual |
LUAD-CT-Survival | DICOM | NIfTI | Lung tumor | Contrast-enhanced | Semiautomatic |
RIDER-Lung-CT | DICOM | DICOM-SEG, DICOM-RT | Lung tumor | Non-contrast | Manual (radiation oncologist), automatic |
BraTS-2021 | NIfTI | NIfTI | Brain tumor | T1, T1CE, T2, FLAIR | Manual (4 readers) |
UCSF-PDGM | NifTI | NifTI | Brain tumor | T2w, T2/FLAIR, SWI, DWI, T1w, T1CE, ASL, HARDI | Semiautomatic |
UPENN-GBM | NIfTI | NIfTI | Brain tumor | T1w, T1CE, T2w, FLAIR, DTI, DSC | Manual, automatic |
Meningioma-SEG-CLASS | DICOM | DICOM-RT | Brain tumor | T1w, T1CE, T2-FLAIR | Manual (radiation oncologist) |
LGG-1p19qDeletion | DICOM | DICOM-SEG | Brain tumor | T1w, T2w | Manual |
PI-CAI | MHA | NIfTI | Prostate lesion | T2w, ADC, high b-val (HBV) | Manual, automatic |
Prostate-MRI-US-Biopsy | DICOM | STL | Prostate lesion | T2w | Manual |
QIN-PROSTATE | DICOM | DICOM-SEG | Prostate lesion | T2w, ADC, DCE subtraction | Manual |
Head-Neck-Radiomics-HN1 | DICOM | DICOM-SEG | Head and neck tumor | Venous phase | Manual |
HNSCC | DICOM | DICOM-SEG | Head and neck tumor | Non-contrast | Manual (radiation oncologist) |
Head-Neck-PET-CT | DICOM | DICOM-RT | Head and neck tumor | Non-contrast (CT), static (PET) | Manual |
OPC-Radiomics | DICOM | DICOM-SEG | Head and neck tumor | Non-contrast | Manual |
QIN-HEADNECK | DICOM | DICOM-SEG | Head and neck tumor | Non-contrast (CT), static (PET) | Manual |
Colorectal-Liver-Metastases | DICOM | DICOM-SEG | Liver tumor | Portal venous phase | Semiautomatic |
HCC-TACE-Seg | DICOM | DICOM-SEG | Liver tumor | Portal venous phase | Semiautomatic |
C4KC-KiTS | DICOM | DICOM-SEG | Kidney tumor | Corticomedullary phase | Manual |
Soft-tissue-Sarcoma | DICOM | DICOM-RT | Soft tissue tumor | T1w, STIR, T2FS (MRI), non-contrast (CT), static (PET) | Manual |
WORC Desmoid | NIfTI | NIfTI | Soft tissue lesion | T1w | Manual |
WORC Liver | NIfTI | NIfTI | Liver lesion | T2w | Manual |
WORC CRLM | NIfTI | NIfTI | Liver lesion | Portal venous phase | Manual |
WORC Melanoma | NIfTI | NIfTI | Lung tumor | Contrast-enhanced | Manual |
WORC Lipo | NIfTI | NIfTI | Soft tissue lesion | T1w | Manual |
WORC GIST | NIfTI | NIfTI | GI tract lesion | Venous phase | Manual |