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Table 4 Selected databases (n = 83) providing additional information other than DICOM images

From: How does DICOM support big data management? Investigating its use in medical imaging community

Dataset name

Dataset collection

Pathology

Region

Modality

Number of samples

CI

A/S

CR

TCIA analysis results

PNEUMONIA

RSNA

Pneumonia

Lung

RX

30,000

N

Y (JSON)

N

 

CT Lymph Nodes

TCIA

Lymphadenopathy

Abdomen, mediastinum

CT

176

N

Y (NIfTI)

N

 

Pancreas-CT

TCIA

Healthy controls

Pancreas

CT

82

N

Y (NIfTI)

N

 

Prostate-3 T

TCIA

Prostate cancer

Prostate

MR

64

N

Y (.mhd)

N

 

RIDER Lung CT

TCIA

Lung cancer

Chest

CT

32

N

Y (XLS), Y*a, YR

N

[78, 79]

Brain-Tumor-Progression

TCIA

Brain cancer

Brain

MR

20

N

Y*

N

 

CBIS-DDSM

TCIA

Breast cancer

Breast

MG

1566

N

Y*

N

 

QIN LUNG CT

TCIA

Non-small cell lung cancer

Lung

CT

47

N

Ya (NIfTI), Y*a

N

[78,79,80,81,82]

4D-Lung

TCIA

Non-small cell lung cancer

Lung

CT

20

N

YR

N

 

AAPM RT-MAC Grand Challenge 2019

TCIA

Head and neck cancer

Head–neck

MR

55

N

YR

N

 

Head–Neck Cetuximab (RTOG 0522)

TCIA

Head and neck carcinomas

Head–neck

CT, PT

111

N

YR

N

 

LCTSC

TCIA

Lung cancer

Lung

CT

60

N

YR

N

 

MRI-DIR

TCIA

Squamous cell carcinoma

Head and Neck

MR, CT

9

N

YR

N

 

Anti-PD-1 Lung

TCIA

Lung cancer

Lung

CT, PT, SC

46

N

Y*a

Y*a

[83]

Anti-PD-1_MELANOMA

TCIA

Melanoma

Skin

CT, MR, PT

47

N

Y*a

Y*a

[83]

CT Colonography (ACRIN 6664)

TCIA

Colon cancer

Colon

CT

825

Yb

N

N

 

LDCT-and-Projection-data

TCIA

Various

Head, chest, abdomen

CT

300

Yb

N

N

 

NSCLC-Radiomics-Genomics

TCIA

Lung cancer

Lung

CT

89

Yb

N

N

 

REMBRANDT

TCIA

Low- and high-grade glioma

Brain

MR

130

Yb

N

N

 

Acrin-FLT-Breast (ACRIN 6688)

TCIA

Breast cancer

Breast

PET, CT, OT

83

Y

N

N

 

Acrin-FMISO-Brain (ACRIN 6684)

TCIA

Glioblastoma

Brain

CT, MR, PT

45

Y

N

N

 

ACRIN-NSCLC-FDG-PET (ACRIN 6668)

TCIA

Non-small cell lung cancer

Lung

PT, CT, MR, CR, DX, SC, NM

242

Y

N

N

 

CPTAC-CM

TCIA

Cutaneous melanoma

Skin

MR, CT, CR, PT, pathology

94

Y

N

N

 

CPTAC-LSCC

TCIA

Squamous cell carcinoma

Lung

CT, CR, DX, NM, PT, pathology

212

Y

N

N

 

CPTAC-LUAD

TCIA

Adenocarcinoma

Lung

CT, MR, PT, CR, pathology

244

Y

N

N

 

TCGA-CESC

TCIA

Cervical squamous cell carcinoma and endocervical adenocarcinoma

Cervix

MR, pathology

54

Yb

N

N

 

TCGA-ESCA

TCIA

Esophageal carcinoma

Esophagus

CT, pathology

16

Yb

N

N

 

TCGA-KICH

TCIA

Kidney chromophobe

Kidney

CT, MR, pathology

15

Y

N

N

 

TCGA-KIRP

TCIA

Kidney renal papillary cell carcinoma

Renal

CT, MR, PT, pathology

33

Y

N

N

 

TCGA-PRAD

TCIA

Prostate cancer

Prostate

CT, PT, MR, Pathology

14

Y

N

N

 

TCGA-READ

TCIA

Rectum adenocarcinoma

Rectum

CT, MR, pathology

3

Y

N

N

 

TCGA-SARC

TCIA

Sarcomas

Chest, abdomen, pelvis, leg, TSpine

CT, MR, pathology

5

Y

N

N

 

TCGA-STAD

TCIA

Stomach adenocarcinoma

Stomach

CT, pathology

46

Yb

N

N

 

TCGA-THCA

TCIA

Thyroid cancer

Thyroid

CT, PT, pathology

6

Y

N

N

 

LGG-1p19qDeletion

TCIA

Low grade glioma

Brain

MR

159

Yb

Y (NIfTI)

N

 

Lung Fused-CT-Pathology

TCIA

Lung cancer

Lung

CT, pathology

6

Yb

N

N

 

LungCT-Diagnosis

TCIA

Lung cancer

Lung

CT

61

Yb

Y (XLS), Ya (NIfTI)

N

[80,81,82]

Prostate-Diagnosis

TCIA

Prostate cancer

Prostate

MR

92

Yb

Y (.NRRD)

N

 

PROSTATEx

TCIA

Prostate cancer

Prostate

MR

346

Yb

Y (CSV)

N

 

SPIE-AAPM Lung CT Challenge

TCIA

Lung cancer

Lung

CT

70

Yb

Y (XLS)

N

 

Head-Neck-Radiomics-HN1

TCIA

Head and neck cancer

Head–neck

CT, PT, SEG

137

Yb

Y*,YR

N

 

NSCLC-Radiomics

TCIA

Lung cancer

Lung

CT, SEG

422

Yb

Y*, Ya (NIfTI), YR

N

[84,85,86]

NSCLC-Radiomics-Interobserver1

TCIA

Non-small cell lung cancer

Lung

CT, SEG

22

Yb

Y*, YR

N

 

TCGA-GBM

TCIA

Glioblastoma multiforme

Brain

MR, CT, DX, pathology

262

Y

Y*a, Ya (NIfTI, XML)

N

[87,88,89,90]

TCGA-LGG

TCIA

Low-grade glioma

Brain

MR, CT, pathology

199

Y

Y*a, Ya (NIfTI)

N

[88,89,90]

Head-Neck-PET-CT

TCIA

Head and neck cancer

Head–neck

PT, CT

298

Yb

YR

N

 

HNSCC

TCIA

Head and neck squamous cell carcinoma

Head–neck

CT, PT, MR

627

Y

YR

N

 

HNSCC-3DCT-RT

TCIA

Head and neck squamous cell carcinoma

Head–neck

CT, DICOM-RT, RTDOSE

31

Yb

YR

N

 

OPC-Radiomics

TCIA

Oropharyngeal

Head-and-neck

CT, DICOM-RT, Clinical

606

Yb

YR

N

 

Soft-tissue-Sarcoma

TCIA

Soft-tissue sarcoma

Extremities

FDG-PET/CT, MR

51

Y

YR

N

 

CPTAC-CCRCC

TCIA

Clear cell carcinoma

Kidney

CT, MR, pathology

222

Y

Y*a

Y*a

[83]

CPTAC-GBM

TCIA

Glioblastoma multiforme

Brain

CT, CR, SC, MR, pathology

189

Y

Y*a

Y*a

[83]

CPTAC-HNSCC

TCIA

Head and neck cancer

Head–neck

CT, MR, SC, pathology

112

Y

Y*a

Y*a

[83]

CPTAC-PDA

TCIA

Ductal adenocarcinoma

Pancreas

CT, MR, DX, PT, XA, CR, US, pathology

168

Y

Y*a

Y*a

[83]

TCGA-BLCA

TCIA

Bladder endothelial carcinoma

Bladder

CT, CR, MR, PT, DX, pathology

120

Y

Y*a

Y*a

[83]

TCGA-COAD

TCIA

Colon adenocarcinoma

Colon

CT, pathology

25

Y

Y*a

Y*a

[83]

TCGA-LUSC

TCIA

Lung squamous cell carcinoma

Lung

CT, NM, PT, pathology

37

Y

Y*a

Y*a

[83]

TCGA-UCEC

TCIA

Uterine corpus endometrial carcinoma

Uterus

CT, CR, MR, PT, pathology

65

Y

Y*a

Y*a

[83]

Breast-MRI-NACT-Pilot

TCIA

Breast cancer

Breast

MR, SEG

64

Yb

Y*

Y*a

[91]

C4KC-KiTS

TCIA

Kidney cancer

Kidney

CT, SEG

210

Yb

Y*

N

 

ISPY1 (ACRIN 6657)

TCIA

Breast cancer

Breast

MR, SEG

222

Yb

Y*

Y*a

[91]

NSCLC-Radiogenomics

TCIA

Non-small cell lung cancer

Chest

PT, CT, SEG, SR

211

Yb

Y (XML), Y*, Y*a

Y*a

[83]

TCGA-HNSC

TCIA

Head and neck squamous cell carcinoma

Head-neck

CT, MR, PT, Pathology

227

Y

Y*a, YR

Y*a

[83]

LIDC-IDRI

TCIA

Lung cancer

Chest

CT, CR, DX

1010

Yb

Y (XML), Y*a

Y*a

[78, 79, 92,93,94,95]

QIN-HeadNeck

TCIA

Head and neck carcinomas

Head-neck

PT, CT, SR, SEG, RWV

156

Yb

Y*

Y*

 

CPTAC-UCEC

TCIA

Corpus endometrial carcinoma

Uterus

CT, MR, PT, CR, DX, SR, pathology

250

Y

Y*a

Y* (incomplete SR), Y*a

[83]

TCGA-KIRC

TCIA

Kidney renal clear cell carcinoma

Renal

CT, MR, CR, pathology

267

Y

Ya (XLS)

Y*a

[96]

TCGA-BRCA

TCIA

Breast cancer

Breast

MR, MG, pathology

139

Y

Ya (XLS)

Y*a

[91, 97,98,99,100,101,102]

TCGA-LIHC

TCIA

Liver hepatocellular carcinoma

Liver

MR, CT, PT, pathology

97

Y

Ya (XML)

Y*a

[96]

TCGA-LUAD

TCIA

Lung adenocarcinoma

Chest

CT, PT, NM, pathology

69

Y

Ya (XLS)

Y*a

[96]

TCGA-OV

TCIA

Ovarian serous cystadenocarcinoma

Ovary

CT, MR, pathology

143

Y

Ya (XLS)

Y*a

[96]

CPTAC-SAR

TCIA

Sarcomas

Various (11 locations)

CT, MR, PT, SR, pathology

94

Y

N

Y* (incomplete SR)

 

Breast Diagnosis

TCIA

Breast cancer

Breast

MR, PT, CT, MG

88

Yb

N

Y (.XLS), Y*a

[91]

COVID-19-AR

TCIA

COVID-19

Chest

CT, CR, DX

105

Y

N

N

 

MIDRC-RICORD-1a

TCIA

COVID-19

Chest

CT

110

Yb

Y (.JSON)

N

 

MIDRC-RICORD-1b

TCIA

COVID-19

Chest

CT

117

Yb

N

N

 

MIDRC-RICORD-1c

TCIA

COVID-19

Chest

CR, DX

361

Yb

Y (.JSON)

N

 

ELCAP Public Lung Image Database

NA

Lung cancer

Lung

CT

50

N

Y (.CSV)

N

 

I2CVB Prostate

NA

Prostate cancer

Prostate

MR

12

Y

N

N

 

MIMBCD-UI UTA4

MIMBCD

Breast cancer

Breast

US, MG, MRI

3

Y

N

N

 

MIMBCD-UI UTA7

MIMBCD

Breast cancer

Breast

US, MG

6

Y

Y (.JSON)

N

 

MIMBCD-UI UTA10

MIMBCD

Breast cancer

Breast

US, MG

6

Y

Y (.JSON)

N

 

eNKI_RS_TRT

NKI_RS

No

Brain

MRI

24

Y

N

N

 
  1. TCIA, The Cancer Imaging Archive; CT, computed tomography; MR, magnetic resonance; PT (or PET), positron emission tomography; SR, structured report; CR, computed radiography; MG, mammography; DX, digital radiography; XA, X-ray angiography; SC, secondary capture; NM, nuclear medicine; OT, other modality; RWV, real-world value; CI, clinical info; No, number of cases; A/S, annotations/segmentations; CR, clinical report; JSON, JavaScript object notation; NIfTI, Neuroimaging Informatics Technology Initiative; CSV, comma separated value; XLS, excel spreadsheet; XML, extensible markup language; NRRD, nearly raw raster data; mhd, MetaImage; Y, yes; N, no; NA, not applicable
  2. Lines with bold correspond to the finally selected datasets (n = 34)
  3. *Additional information provided according to DICOM format (DICOM-SEG for annotations/segmentations and DICOM-SR for clinical reports)
  4. aAnnotations/segmentations and/or clinical reports provided by researchers who were not part of the group which originally submitted the related TCIA collection, with related references reported in “TCIA analysis results” column
  5. bClinical info supposed to be enough to reconstruct DICOM-SR (namely if related imaging series is provided and/or if the clinical information refers to a single imaging modality)
  6. RAnnotations/segmentations provided as DICOM-RT